Nexus’s Internal Modules

• debug

• developer

• execute

• fileio

• generic

• hdfreader

• index

• memory

• nexus_base

• numerics

• numpy_extensions

• observables

• periodic_table

• project_manager

• simulation

• testing

• unit_converter

• utilities

• xmlreader

• Debug Module
  • ci
  • interact
• Developer Module
  • DevBase
  • unavailable
  • available
  • valid_variable_name
• Execute Module
  • execute
• File IO Module
  • TextFile
  • StandardFile
  • XsfFile
  • PoscarFile
  • ChgcarFile
  • read_poscar_chgcar
• Nexus Generic Module
  • generic_settings
  • NexusError
  • NexusDevWarning
  • NexusUserWarning
  • nocopy
  • NexusUnpickler
  • log
  • message
  • warn
  • nxs_deprecate
  • error
  • object_interface
  • obj
  • hobj
  • hidden
• Grid Functions Module
• HDF Reader Module
  • HDFglobals
  • HDFgroup
  • HDFreader
  • read_hdf
• Memory Module
  • get_children
  • all_children
  • memory
  • resident
  • stacksize
• NexusBase Module
  • restore_nexus_core_defaults
  • NexusCore
• Numerics Module
  • least_squares
  • absmin
  • madmin
  • curve_fit
  • morse
  • morse_re
  • morse_a
  • morse_De
  • morse_Einf
  • morse_width
  • morse_depth
  • morse_Ee
  • morse_k
  • morse_params
  • morse_reduced_mass
  • morse_freq
  • morse_w
  • morse_wX
  • morse_E0
  • morse_En
  • morse_zero_point
  • morse_harmfreq
  • morse_harmonic_potential
  • morse_spect_fit
  • morse_rDw_fit
  • morse_fit
  • morse_fit_fine
  • murnaghan
  • birch
  • vinet
  • murnaghan_pressure
  • birch_pressure
  • vinet_pressure
  • eos_Einf
  • eos_V
  • eos_B
  • eos_Bp
  • eos_eval
  • eos_param
  • eos_fit
  • jackknife
  • numerics_jackknife
  • jackknife_aux
  • check_jackknife_inputs
  • ndgrid
  • simstats
  • simplestats
  • equilibration_length
  • ttest
  • surface_normals
  • simple_surface
  • func_fit
  • distance_table
  • nearest_neighbors
  • voronoi_neighbors
  • convex_hull
  • layers_1d
  • layer_means_1d
  • index_by_layer_1d
• Numpy Extensions Module
  • reshape_inplace
• Observables Module
  • VLog
  • set_verbosity
  • Missing
  • AttributeProperties
  • DefinedAttributeBase
  • Observable
  • ObservableWithComponents
  • read_eshdf_nofk_data
  • MomentumDistribution
  • MomentumDistributionDFT
  • MomentumDistributionQMC
  • Density
  • ChargeDensity
  • EnergyDensity
  • StatFile
• Periodic Table Module
  • ElementData
  • Elements
• Project Manager Module
  • trivial
  • ProjectManager
  • DynamicWorkflowManager
  • workflow_manager
• Simulation Module
  • SimulationInput
  • SimulationAnalyzer
  • SimulationEmulator
  • SimulationImage
  • Simulation
  • NullSimulationInput
  • NullSimulationAnalyzer
  • GenericSimulationInput
  • GenericSimulation
  • SimulationInputTemplateDev
  • SimulationInputMultiTemplateDev
  • SimulationInputTemplate
  • SimulationInputMultiTemplate
  • input_template_dev
  • multi_input_template_dev
  • input_template
  • multi_input_template
  • generate_template_input
  • generate_multi_template_input
  • generate_simulation
  • graph_sims
  • DynamicProcess
• Testing Module
  • float_diff
  • value_diff
  • object_diff
  • read_text_value
  • read_text_tokens
  • text_diff
  • print_diff
  • check_value_eq
  • check_object_eq
  • value_neq
  • value_eq
  • object_neq
  • object_eq
  • text_neq
  • text_eq
  • failed
  • FailedTest
  • clear_all_sims
  • check_final_state
  • execute
• Unit Converters Module
  • Unit
  • UnitConverter
  • convert
• Utilities Module
  • per_type_cmp
  • python2_sort_key
  • dict_cmp
  • sorted_py2
  • to_str
  • is_valid_path
  • is_valid_filename
  • is_relative_path
  • path_string
• XML Reader Module
  • parse_string
  • find_pair
  • remove_pair_sections
  • remove_empty_lines
  • XMLelement
  • XMLreader
  • readxml